See download stats for: Bioconductor annotation packages Bioconductor experiment packages Bioconductor workflow packages

Download stats for Bioconductor software packages

This page was generated on 2025-03-11 06:50:44 -0400 (Tue, 11 Mar 2025).

The number reported next to each package name is the download score, that is, the average number of distinct IPs that “hit” the package each month for the last 12 months (not counting the current month).

Top 75

1	BiocVersion (60024)
2	BiocGenerics (57494)
3	GenomeInfoDb (55843)
4	S4Vectors (55451)
5	zlibbioc (54575)
6	IRanges (54350)
7	XVector (49616)
8	Biobase (49430)
9	Biostrings (48775)
10	GenomicRanges (44865)
11	DelayedArray (42123)
12	BiocParallel (41728)
13	MatrixGenerics (41096)
14	S4Arrays (40745)
15	SparseArray (40504)
16	SummarizedExperiment (40008)
17	AnnotationDbi (36221)
18	KEGGREST (36163)
19	limma (34377)
20	UCSC.utils (30857)
21	BiocFileCache (25893)
22	Rhtslib (24313)
23	edgeR (23760)
24	Rsamtools (23691)
25	GenomicAlignments (23216)

26	Rhdf5lib (23180)
27	DESeq2 (22428)
28	ggtree (22236)
29	biomaRt (22063)
30	treeio (21487)
31	rhdf5 (20702)
32	rtracklayer (20557)
33	clusterProfiler (20433)
34	enrichplot (19731)
35	rhdf5filters (19681)
36	BiocIO (19674)
37	DOSE (19388)
38	graph (19243)
39	fgsea (19217)
40	GOSemSim (18909)
41	GenomicFeatures (18715)
42	qvalue (18681)
43	annotate (17209)
44	SingleCellExperiment (16089)
45	DelayedMatrixStats (16036)
46	beachmat (15929)
47	BSgenome (15888)
48	ComplexHeatmap (15862)
49	sparseMatrixStats (15574)
50	HDF5Array (14806)

51	preprocessCore (14190)
52	BiocSingular (12721)
53	ScaledMatrix (12509)
54	multtest (12000)
55	genefilter (11849)
56	VariantAnnotation (11637)
57	AnnotationHub (11537)
58	ProtGenerics (11490)
59	BiocNeighbors (10937)
60	AnnotationFilter (10923)
61	impute (10602)
62	ensembldb (9762)
63	GEOquery (9726)
64	scuttle (9279)
65	RBGL (9267)
66	Rgraphviz (9264)
67	GSEABase (8897)
68	affyio (7977)
69	affy (7875)
70	ExperimentHub (7769)
71	sva (7403)
72	GSVA (7244)
73	scater (6979)
74	BiocBaseUtils (6800)
75	MultiAssayExperiment (6295)

All software packages

All software package stats in one file: bioc_pkg_stats.tab

All software package download scores in one file: bioc_pkg_scores.tab

See Download stats for Bioconductor software repository (all packages combined)

A

	a4 (158)
	a4Base (188)
	a4Classif (154)
	a4Core (199)
	a4Preproc (193)
	a4Reporting (152)
	aads.rnai (1)
	AAVess (0)
	ABAData (1)
	ABAEnrichment (35)
	abaenrichment (0)
	ABarray (156)
	abc (0)
	abc.data (1)
	abe (0)
	ABHgenotypeR (1)
	abif (1)
	abind (42)
	abseqR (101)
	ABSOLUTE (1)
	ABSSeq (175)
	acde (121)
	ACE (131)
	ace.fma (1)
	acepack (1)
	aCGH (245)
	ACME (165)
	ACTIONet (1)
	ActivePathways (1)
	actuar (1)
	ada (1)
	adabag (0)
	ADaCGH2 (143)
	ADAM (191)
	ADAMgui (104)
	ADAPT (22)
	adaptest (13)
	AdaptGauss (1)
	adbcdrivermanager (1)
	adductData (0)
	adductomicsR (99)
	ade4 (3)
	adegenet (1)
	adegraphics (1)
	adehabitat (1)
	adehabitatLT (1)
	adephylo (1)
	ADGofTest (0)
	ADImpute (109)
	aditools (0)
	adjustedCurves (0)
	admiral (2)
	admiral.test (0)
	admiraldev (2)
	admiralonco (1)
	admiralophtha (1)
	admiralroche (1)
	admisc (7)
	admixtools (0)
	ADMM (0)
	adSplit (141)
	adverSCarial (73)
	AER (1)
	afex (2)
	affio (0)
	AffiXcan (97)
	affxparser (1569)
	affy (7875)
	Affy (1)
	affycomp (161)
	AffyCompatible (71)
	affyContam (160)
	affycoretools (407)
	affydata (5)
	AffyExpress (59)
	affyILM (146)
	affyio (7977)
	affylmGUI (171)
	affyPara (58)
	affypdnn (55)
	affyPLM (978)
	affyplm (0)
	affyQCReport (63)
	AffyRNADegradation (128)
	AffyTiling (41)
	AGDEX (132)
	aggregateBioVar (105)
	aggregation (0)
	AGHmatrix (0)
	Agi4x44PreProcess (20)
	agilp (144)
	AgiMicroRna (197)
	agricolae (11)
	agridat (1)
	AHMassBank (85)
	AICcmodavg (0)
	aigoraFitMini (1)
	AIMS (377)
	AIPW (0)
	airpart (103)
	airr (1)
	airway (1)
	akima (1)
	alabama (0)
	alabaster (86)
	alabaster.base (2932)
	alabaster.bumpy (96)
	alabaster.files (74)
	alabaster.mae (102)
	alabaster.matrix (2915)
	alabaster.ranges (2789)
	alabaster.sce (961)
	alabaster.schemas (2604)
	alabaster.se (2715)
	alabaster.spatial (102)
	alabaster.string (110)
	alabaster.vcf (101)
	alakazam (1)
	ald (0)
	ALDEx2 (1213)
	aldvmm (1)
	alembic (0)
	alevinQC (120)
	AlgDesign (4)
	alkahest.generic (0)
	ALL (11)
	AllelicImbalance (160)
	alluvial (0)

	almanac (0)
	AlphaBeta (93)
	alphahull (0)
	AlphaMissenseR (76)
	alphashape3d (0)
	AlphaSimR (1)
	alphavantager (1)
	alpine (42)
	ALPS (11)
	AlpsNMR (116)
	alr3 (1)
	alr4 (0)
	alsace (40)
	altair (0)
	altcdfenvs (164)
	amap (1)
	AMARETTO (192)
	ambient (0)
	Amelia (3)
	AmesHousing (0)
	amgen.okta.client (1)
	amgsafetyvis (1)
	amlogger (0)
	AMOUNTAIN (110)
	amplican (128)
	ampliQueso (35)
	AnalysisPageServer (30)
	anamiR (15)
	Anaquin (103)
	ANCOMBC (1228)
	ANCOMBCs (1)
	Andromeda (1)
	AneuFinder (137)
	aneufinder (0)
	AneuFinderData (0)
	aneufinderdata (0)
	ANF (107)
	angrycell (1)
	animalcules (245)
	animation (1)
	annaffy (305)
	AnnBuilder (10)
	annbuilder (0)
	anndata (1)
	annmap (117)
	AnnoProbe (1)
	annotate (17209)
	annotation (0)
	AnnotationDbi (36221)
	annotationdbi (1)
	annotationDBI (1)
	AnnotationFilter (10923)
	AnnotationForge (2085)
	AnnotationFuncs (49)
	AnnotationHub (11537)
	annotationhub (1)
	AnnotationHubData (366)
	annotationTools (157)
	annotatr (482)
	anota (141)
	anota2seq (120)
	anRichment (0)
	antaresProcessing (1)
	anticlust (0)
	antiProfiles (119)
	AnVIL (533)
	AnVILAz (44)
	AnVILBase (104)
	AnVILBilling (83)
	AnVILGCP (48)
	AnVILPublish (94)
	AnVILWorkflow (76)
	anytime (12)
	aod (2)
	APAlyzer (114)
	apcluster (1)
	apComplex (139)
	APCtools (0)
	ape (57)
	apeglm (3684)
	apexcharter (1)
	APL (180)
	apLCMS (1)
	aplot (40)
	appgen (0)
	applera (3)
	appreci8R (103)
	aqp (1)
	archive (2)
	ArchR (0)
	argparse (12)
	argparser (1)
	argus.DS.Credentials (3)
	argusDS.apc.utils (3)
	argusDS.backtesting.engine (2)
	argusDS.data (3)
	argusDS.data.engineering (1)
	argusDS.data.preparation (1)
	argusDS.data.preparation2 (4)
	argusDS.data.visualisation (0)
	argusDS.database (2)
	argusDS.DataValidation (1)
	argusDS.DB.manager.utilities (1)
	argusDS.distributions (0)
	argusDS.driver.importance (2)
	argusDS.FCUtilities (1)
	argusDS.FZ.SourceData (1)
	argusDS.FZ.utils (1)
	argusDS.gamboostLSS (0)
	argusDS.gamlss.distributions (1)
	argusDS.gamlss.forecast (2)
	argusDS.gamlss.modelling (3)
	argusDS.gamlss.smoothers (0)
	argusDS.gamlss.testing (3)
	argusDS.gamlss.utils (2)
	argusDS.GlobalSettings (1)
	argusDS.model.testing (1)
	argusDS.model.tools (3)
	argusDS.model.validation (0)
	argusDS.modeldb (1)
	argusDS.possibility.curves.daily (1)
	argusDS.PossibilityCurves.db.utils (3)
	argusDS.PossibilityCurves.utils (1)
	argusDS.S3 (2)
	argusDS.shiny.utils (1)
	argusDS.signal.backtesting (1)
	argusDS.signal.dataprep (2)
	argusDS.signal.generation (1)

	argusDS.smoothers (0)
	argusDS.spread.trading.utils (2)
	argusDS.Studio.APC (1)
	argusDS.Studio.FC (1)
	argusDS.studio.ml (1)
	argusDS.studio.model.utils (1)
	argusDS.Studio.MyStudio (2)
	argusDS.Studio.permissions (3)
	argusDS.Studio.utils (3)
	argusDS.studio.visualisations (1)
	argusDS.tabulator (3)
	argusDS.trading.optimization (1)
	argusDS.trading.performance (1)
	argusDS.TradingSignals (1)
	argusDS.UI (2)
	argusDS.utilities (1)
	aricode (1)
	arm (4)
	aroma.affymetrix (9)
	aroma.apd (9)
	aroma.core (9)
	aroma.light (1899)
	arpr (0)
	ArrayExpress (434)
	arrayexpress (0)
	ArrayExpressHTS (50)
	arrayhelpers (0)
	arrayMagic (8)
	arrayMvout (131)
	arrayop (1)
	arrayQCplot (3)
	arrayQuality (222)
	arrayQualityMetrics (471)
	arrayqualitymetrics (0)
	ArrayTools (56)
	ArrayTV (42)
	ARRmData (0)
	ARRmNormalization (122)
	arrow (21)
	arsenal (1)
	artMS (120)
	arules (1)
	ArvadosR (1)
	ASAFE (92)
	ASCAT (1)
	ascii (1)
	asciicast (1)
	ASEB (120)
	ASExtras4 (0)
	AsgntDAMacro (1)
	ASGSCA (115)
	ash (6)
	ashr (1)
	asht (0)
	ASICS (135)
	AsioHeaders (4)
	askpass (138)
	ASMap (1)
	asmn (7)
	asnipe (0)
	ASpediaFI (20)
	ASpli (145)
	asremlPlus (0)
	assert (0)
	assertive (1)
	assertive.base (1)
	assertive.code (1)
	assertive.data (1)
	assertive.data.uk (1)
	assertive.data.us (1)
	assertive.datetimes (1)
	assertive.files (1)
	assertive.matrices (1)
	assertive.models (1)
	assertive.numbers (1)
	assertive.properties (2)
	assertive.reflection (1)
	assertive.sets (1)
	assertive.strings (1)
	assertive.types (2)
	assertr (1)
	assertthat (2)
	AssessORF (184)
	ASSET (151)
	ASSIGN (166)
	assorthead (3792)
	AssotesteR (0)
	astsa (0)
	ASURAT (96)
	async (1)
	ATACCoGAPS (52)
	ATACseqQC (400)
	ATACseqTFEA (94)
	ATE (1)
	atena (93)
	AtlasRDF (26)
	ATR (0)
	atSNP (121)
	attachment (2)
	attempt (1)
	attract (151)
	AUC (1)
	AUCell (2548)
	audio (1)
	audited (1)
	auth0 (1)
	automap (3)
	autometric (1)
	autonomics (88)
	autoslideR (1)
	Autotuner (11)
	av (1)
	ava2 (1)
	AWFisher (99)
	aws (1)
	aws.ec2metadata (0)
	aws.s3 (6)
	aws.signature (6)
	awsMethods (1)
	awst (87)
	azcore (1)
	Azimuth (0)
	AzureAuth (0)
	AzureGraph (3)
	AzureRMR (3)
	AzureStor (0)

B

	b64 (1)
	BaalChIP (112)
	babelgene (6)
	babelmixr2 (1)
	babelwhale (0)
	babynames (0)
	BAC (50)
	backports (127)
	bacon (169)
	bacr (0)
	BADER (122)
	badger (1)
	badminton (1)
	BadRegionFinder (105)
	BAGS (130)
	baguette (0)
	bain (1)
	BalancedSampling (0)
	ballgown (575)
	bambu (300)
	bamsignals (1021)
	BANDITS (118)
	bandle (93)
	Banksy (191)
	banocc (114)
	barcodetrackR (90)
	BART (0)
	bartMachine (0)
	bartMachineJARs (0)
	BARTools (1)
	base (1)
	base2grob (1)
	base64 (3)
	base64enc (1)
	base64url (0)
	basecallQC (110)
	basefun (0)
	basemaps (1)
	BaseSpaceR (129)
	Basic4Cseq (130)
	BASiCS (166)
	BASiCStan (119)
	BasicSTARRseq (102)
	basilisk (3370)
	basilisk.utils (3235)
	batchelor (3897)
	BatchJobs (1)
	BatchQC (152)
	batchtools (0)
	battenberg (1)
	BayesFactor (2)
	BayesFM (0)
	BayesianTools (0)
	BayesKnockdown (98)
	bayesm (1)
	bayesmeta (0)
	BayesPeak (49)
	bayespeak (0)
	BayesPen (0)
	bayesplot (10)
	BayesPostEst (1)
	bayesQR (0)
	BayesSpace (283)
	bayestestR (12)
	BayesX (0)
	bayNorm (124)
	baySeq (483)
	bayseq (1)
	BB (1)
	BBCAnalyzer (117)
	BBmisc (1)
	bbmle (12)
	bbotk (1)
	bbr (1)
	bbr.bayes (1)
	bccaEndometrial (1)
	BCEE (0)
	bcellViper (0)
	bcp (1)
	BCRANK (146)
	BCS.OptimizedDesignsForPrism (1)
	BCS.RSB (1)
	bcSeq (99)
	BDgraph (0)
	BDMMAcorrect (36)
	bdsmatrix (15)
	BE (1)
	beachmat (15929)
	beachmat.hdf5 (130)
	beachmat.tiledb (14)
	beadarray (671)
	beadarraySNP (76)
	BeadDataPackR (568)
	BeadExplorer (6)
	beanplot (1)
	BEARscc (77)
	BEAT (128)
	beaver (1)
	BEclear (128)
	bedbaser (3)
	bedr (0)
	beepr (1)
	beer (92)
	beeswarm (1)
	bench (0)
	benchdamic (102)
	benchmarkme (0)
	benchmarkmeData (0)
	benchr (0)
	BentoBox (0)
	berryFunctions (1)
	BERT (66)
	Bessel (0)
	bestglm (0)
	bestNormalize (2)
	betaHMM (62)
	betareg (1)
	betr (46)
	bettermc (1)
	bettr (62)
	BeviMed (0)
	bezier (0)
	BFpack (1)
	BG2 (80)
	bgafun (50)
	BgeeCall (83)
	BgeeDB (162)
	BGLR (2)
	BGmix (44)
	bgs.ggtheme (1)
	bgs.hephaistos (1)
	bgs.hermes (1)
	bgx (119)
	BH (219)
	BHC (90)
	BIApylon (1)
	BiasedUrn (11)
	BIAutils (1)
	bib2df (1)
	bibliometrix (1)
	bibtex (1)
	BicARE (161)
	biclust (0)

	BIEN (1)
	bife (0)
	BiFET (105)
	biganalytics (0)
	bigassertr (0)
	bigD (16)
	bigdist (0)
	BiGGR (122)
	BIGL (0)
	biglasso (0)
	biglm (4)
	biglmm (0)
	bigmelon (111)
	bigmemory (3)
	bigmemory.sri (3)
	bigmemoryExtras (41)
	bigparallelr (0)
	bigPint (28)
	bigreadr (0)
	bigrquery (11)
	bigsnpr (0)
	bigsparser (1)
	bigstatsr (1)
	bigutils (0)
	bigutilsr (0)
	billboarder (7)
	bim (5)
	BiMax (0)
	binb (1)
	BindingSiteFinder (91)
	bindr (1)
	bindrcpp (1)
	binGroup (0)
	binman (2)
	binom (0)
	binr (0)
	bio3d (3)
	bioassayR (133)
	biobank (1)
	Biobase (49430)
	biobase (1)
	BioBase (1)
	biobroom (256)
	biobtreeR (80)
	bioc::GenomeInfoDbData (0)
	bioCancer (116)
	BioCartaImage (71)
	BiocBaseUtils (6800)
	BiocBook (89)
	BiocBookDemo (3)
	BiocCaseStudies (58)
	BiocCheck (1746)
	biocDatasets (10)
	BiocDockerManager (16)
	BiocFHIR (83)
	BiocFileCache (25893)
	BiocFileCaches (1)
	BiocGenerics (57494)
	BioCGenerics (0)
	biocGraph (259)
	BiocHail (51)
	BiocHubsShiny (113)
	BiocInstaller (239)
	biocinstaller (1)
	Biocinstaller (1)
	BiocInstallerf (0)
	BiocIO (19674)
	biocmake (7)
	BiocManager (352)
	biocmanager (0)
	BiocNeighbors (10937)
	biocneighbors (0)
	BiocOncoTK (74)
	Bioconductor (0)
	bioconductor (0)
	bioconductor-geomxtools (0)
	BioCor (119)
	BiocParallel (41728)
	BiocPkgTools (163)
	biocroxytest (72)
	BiocSet (339)
	BiocSingular (12721)
	BiocSklearn (129)
	BiocStyle (5505)
	biocthis (258)
	BiocVersion (60024)
	biocversion (1)
	Biocversion (0)
	BiocVersionBiocVersion (1)
	biocViews (4423)
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	biodb (163)
	biodbChebi (101)
	biodbExpasy (57)
	biodbHmdb (98)
	biodbKegg (72)
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	biodbUniprot (84)
	bioDist (282)
	BiodiversityR (1)
	BioGA (42)
	Biogenerics (0)
	BioGenerics (0)
	BioInstaller (1)
	biom (0)
	biomanager (0)
	BioManager (1)
	BioMarks.ProteomeR (1)
	biomaRt (22063)
	biomart (1)
	biomartr (1)
	BioMedR (5)
	biomformat (5499)
	BioMM (21)
	biomod2 (1)
	BioMVCClass (140)
	biomvRCNS (133)
	BioNAR (101)
	BioNERO (263)
	BioNet (286)
	BioNetStat (78)
	BioPlex (8)
	BioQC (160)
	BioSeqClass (52)
	biosigner (131)
	biostat3 (0)
	biostatR (0)
	biostatUtil (0)
	Biostring (0)
	Biostrings (48775)
	biostrings (1)
	biosvd (43)
	BioTIP (111)
	biotmle (106)
	biotools (1)
	BioVersion (1)
	biovizBase (5151)
	BiplotML (1)
	BiRewire (197)
	birta (45)

	birte (26)
	biscuiteer (108)
	biscuiteerData (0)
	BiSeq (143)
	bit (123)
	bit64 (98)
	bitops (109)
	BitSeq (59)
	bizdays (2)
	bkbutils (1)
	blacksheepr (105)
	bladderbatch (0)
	BlakerCI (0)
	blastula (1)
	blavaan (1)
	blima (120)
	BLMA (118)
	blme (7)
	blob (39)
	blockcluster (0)
	blockCV (1)
	blockForest (1)
	blockmodeling (1)
	blocksdesign (1)
	blogdown (0)
	BloodCancerMultiOmics2017 (1)
	BloodGen3Module (131)
	bluster (5654)
	BlythStillCasellaCI (1)
	BMA (1)
	bmcite.SeuratData (0)
	BMisc (0)
	BMix (1)
	bmp (0)
	bmspal (1)
	bnbc (199)
	bnem (98)
	bnlearn (2)
	BOBaFIT (95)
	BOIN (0)
	bold (1)
	bonemarrowref.SeuratData (1)
	bonsai (1)
	bookdown (32)
	Boom (1)
	boomer (1)
	BoomSpikeSlab (1)
	boot (89)
	bootstrap (0)
	borealis (94)
	Boruta (1)
	botor (1)
	box (10)
	box.linters (1)
	BPCells (1)
	bpcp (0)
	BPRMeth (121)
	BPSC (1)
	bRacatus (1)
	BradleyTerry2 (0)
	BRAIN (173)
	brainflowprobes (43)
	brainImageR (6)
	BrainSABER (15)
	BrainStars (47)
	branchpointer (124)
	brave (0)
	breakpointR (106)
	breakpointRdata (0)
	brendaDb (94)
	brew (35)
	BREW3R.r (62)
	BRGenomics (89)
	brglm (0)
	brglm2 (1)
	bricks (0)
	brickster (0)
	bridge (57)
	BridgeDbR (121)
	bridgedist (0)
	bridgesampling (0)
	brio (163)
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F

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	sparseDOSSA (38)
	SparseGrid (0)
	SparseM (63)
	sparseMatrixStats (15574)
	sparsematrixstats (2)
	sparsenetgls (84)
	sparsepca (0)
	SparseSignatures (101)
	sparsesvd (16)
	spaSim (89)
	spatial (26)
	SpatialCPie (115)
	spatialDE (130)
	SpatialDecon (225)

	SpatialEpi (0)
	SpatialExperiment (4505)
	spatialexperiment (1)
	SpatialExperimentIO (11)
	spatialFDA (10)
	SpatialFeatureExperiment (205)
	spatialHeatmap (227)
	SpatialOmicsOverlay (99)
	SpatialPack (1)
	spatialreg (0)
	spatialSimGP (27)
	SpATS (1)
	spatstat (5)
	spatstat.core (11)
	spatstat.data (27)
	spatstat.explore (37)
	spatstat.geom (39)
	spatstat.linnet (5)
	spatstat.model (5)
	spatstat.random (37)
	spatstat.sparse (23)
	spatstat.univar (4)
	spatstat.utils (30)
	spatsurv (0)
	spatzie (80)
	spd (0)
	spData (8)
	spdata (1)
	spdep (5)
	spec (1)
	speckle (247)
	specL (118)
	SpeCond (140)
	spectacles (0)
	Spectra (1880)
	SpectralTAD (114)
	SpectraQL (32)
	SpectraVis (0)
	speedglm (0)
	SPEI (1)
	spelling (4)
	SPEM (144)
	spgs (0)
	SPIA (608)
	SPIAT (150)
	spicyR (195)
	SpidermiR (54)
	spikeLI (112)
	spiky (81)
	spillR (67)
	spkTools (127)
	splancs (11)
	splatter (444)
	splice2neo (1)
	splicegear (52)
	spliceR (38)
	spliceSites (38)
	SpliceWiz (150)
	SplicingFactory (79)
	SplicingGraphs (147)
	SplineDV (16)
	splines (1)
	splines2 (1)
	splineTCDiffExpr (1)
	splineTimeR (117)
	SPLINTER (99)
	splitstackshape (1)
	splitTools (1)
	splots (234)
	spls (0)
	splus2R (2)
	spocc (1)
	SPONGE (92)
	spoon (65)
	SpotClean (124)
	SPOTlight (279)
	spotSegmentation (46)
	SpotSweeper (60)
	SPP (1)
	spp (1)
	spqn (86)
	spsComps (0)
	SPsimSeq (189)
	SQLDataFrame (90)
	sqldf (1)
	SqlRender (2)
	SQUADD (58)
	squallms (37)
	SQUAREM (1)
	sRACIPE (104)
	SRAdb (453)
	sradb (1)
	SRAdbV2 (1)
	sRAP (44)
	SRGnet (18)
	srnadiff (91)
	sROC (0)
	Ssa.RefSeq.db (1)
	ssanv (0)
	sscore (67)
	sscu (96)
	SSDM (1)
	sSeq (200)
	ssh (4)
	ssh.utils (0)
	ssize (158)
	sSNAPPY (180)
	SSOAP (1)
	SSPA (114)
	ssPATHS (87)
	ssrch (89)
	ssviz (121)
	stabilityTools (1)
	stable (1)
	stabledist (5)
	StabMap (29)
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	stacks (1)
	stageR (207)
	stam (8)
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	standby (1)
	standR (165)
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	staRank (95)
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	stargazer (0)
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	stars (11)
	starter (1)
	startup (2)
	startupmsg (1)
	StatCharrms (1)
	STATegRa (121)
	statgenGWAS (1)
	statgenSTA (1)
	Statial (100)
	statip (1)
	statmod (2)
	statnet (0)
	statnet.common (2)
	stats (1)
	stats4 (1)
	statsExpressions (3)
	statTarget (136)
	STdeconvolve (147)
	stdmchecks (0)
	stdReg (0)
	stepNorm (131)
	StepReg (1)
	stepwiseCM (38)
	stevedore (0)
	sticky (0)
	stinepack (3)
	stJoincount (94)
	stopwords (1)
	storr (0)
	strandannotate (1)
	strandCheckR (100)
	strawr (1)
	Streamer (130)
	strex (1)
	string (0)
	STRINGdb (1346)
	stringdist (15)
	stringfish (6)
	stringi (322)
	stringr (95)
	striprtf (0)
	STROMA4 (35)
	strucchange (1)
	struct (166)
	Structstrings (155)
	structToolbox (145)
	StructuralVariantAnnotation (240)
	structuralvariantannotation (0)
	stxBrain.SeuratData (1)
	styler (25)
	SubCellBarCode (98)
	subplex (1)
	subselect (0)
	subSeq (123)
	SUITOR (73)
	SummarizedBenchmark (40)
	SummarizedExperiment (40008)
	summarizedExperiment (1)
	summarytools (1)
	Summix (81)
	sunburstR (0)
	superheat (0)
	SuperLearner (1)
	superpc (0)
	supersigs (170)
	SuppDists (3)
	supraHex (378)
	surfaltr (83)
	SurfR (55)
	survClust (42)
	survcomp (1316)
	surveillance (1)
	survex (0)
	survey (5)
	survival (248)
	survivalROC (1)
	SurvMetrics (1)
	survminer (6)
	survMisc (1)
	survMS (0)
	survPen (0)
	survPresmooth (0)
	survtmle (1)
	survtype (92)
	Sushi (75)
	susieR (17)
	sva (7403)
	svaNUMT (91)
	SVAPLSseq (15)
	svaRetro (93)
	svd (2)
	svDialogs (1)
	svglite (21)
	svGUI (0)
	SVM2CRM (28)
	SVMDO (92)
	svMisc (1)
	svUnit (0)
	swagger (1)
	swamp (1)
	SWATH2stats (109)
	SwathXtend (102)
	swfdr (107)
	Swiffer (1)
	SwimR (33)
	swirl (0)
	switchBox (145)
	switchde (100)
	switchstep (1)
	sybil (1)
	sybilGUROBI (0)
	sybilSBML (0)
	sylly (0)
	sylly.en (0)
	symengine (1)
	symphony (1)
	synapser (1)
	synapsis (77)
	synapter (179)
	synbreed (1)
	synergyfinder (244)
	SynExtend (95)
	synlet (105)
	SynMut (90)
	syntenet (133)
	Synth (0)
	sys (121)
	sysfonts (3)
	systemfit (0)
	systemfonts (259)
	systemPipeR (1218)
	systempiper (1)
	systemPipeRdata (0)
	systemPipeShiny (98)
	systemPipeTools (91)
	syuzhet (0)

T

	table1 (3)
	tableHTML (1)
	tableone (0)
	tables (1)
	tabulapdf (1)
	tabulizer (1)
	tabulizerjars (1)
	tadar (85)
	TADCompare (116)
	TailRank (6)
	tanggle (107)
	TAPseq (99)
	tarchetypes (5)
	target (95)
	TargetDecoy (96)
	targets (8)
	TargetScore (129)
	TargetSearch (132)
	targetsearch (0)
	TarSeqQC (39)
	taskscheduleR (1)
	TauStar (0)
	taxadb (1)
	taxize (2)
	taxonomizr (0)
	taylor (1)
	TBSignatureProfiler (97)
	TCC (265)
	TCCGUI (1)
	TCGAbiolinks (4416)
	TCGAbiolinksGUI (36)
	TCGAbiolinksGUI.data (1)
	TCGAplot (1)
	TCGAutils (715)
	tcltk (1)
	tcltk2 (1)
	tclust (1)
	TCseq (452)
	TDARACNE (52)
	TDbasedUFE (90)
	TDbasedUFEadv (86)
	TeachingDemos (2)
	teal (2)
	teal.builder (1)
	teal.builder.checks (0)
	teal.builder.modules (1)
	teal.code (2)
	teal.data (3)
	teal.goshawk (1)
	teal.logger (2)
	teal.modules.clinical (1)
	teal.modules.general (1)
	teal.modules.sanofi (1)
	teal.osprey (1)
	teal.reporter (2)
	teal.slice (3)
	teal.transform (1)
	teal.widgets (1)
	TEKRABber (171)
	templater (1)
	tensor (1)
	tensorA (11)
	tensorflow (10)
	TENxIO (93)
	TENxPBMCData (1)
	tenXplore (90)
	TEQC (145)
	tergm (0)
	tern (4)
	tern.gee (4)
	tern.mmrm (2)
	tern.rbmi (1)
	ternarynet (114)
	terra (27)
	terraTCGAdata (96)
	tesseract (0)
	tester (1)
	TestGenerator (1)
	testit (0)
	testthat (270)
	texreg (1)
	text2vec (1)
	textfeatures (1)
	textrecipes (1)
	textshape (1)
	textshaping (186)
	TFARM (95)
	tfautograph (1)
	TFBSTools (3487)
	tfbstools (1)
	tfdatasets (0)
	TFEA.ChIP (126)
	TFHAZ (96)
	TFisher (1)
	TFMPvalue (8)
	tfrmt (1)
	tfruns (11)
	tfse (1)
	TFutils (113)
	tgp (1)
	tgxWebservices (0)
	TH.data (113)
	thematic (4)
	themeSanofi (1)
	themis (0)
	this.path (1)
	threejs (1)
	ThresholdROC (0)
	tibbke (1)
	tibble (18)
	tictoc (10)
	tidybayes (1)
	tidybulk (327)
	tidycensus (4)
	tidyclust (2)
	tidycmprsk (1)
	tidyCoverage (61)
	tidydr (0)

	tidyFlowCore (43)
	tidyfst (1)
	tidygate (1)
	tidygraph (24)
	tidyHeatmap (0)
	tidyjson (1)
	tidylog (1)
	tidymodels (13)
	tidyomics (84)
	tidyposterior (1)
	tidypredict (1)
	tidyproject (1)
	tidyproteomics (1)
	tidyquant (1)
	tidyr (228)
	tidyrules (0)
	tidysbml (32)
	tidyselect (268)
	tidySEM (1)
	tidyseurat (1)
	tidySingleCellExperiment (233)
	tidySpatialExperiment (75)
	tidySummarizedExperiment (342)
	tidytable (1)
	tidyterra (1)
	tidytext (4)
	tidytlg (1)
	tidytof (40)
	tidytransit (1)
	tidytree (24)
	tidyTree (0)
	tidyverse (18)
	tidyvpc (1)
	tidyxl (1)
	tiff (3)
	tigre (142)
	tigris (12)
	tikzDevice (1)
	tiledb (1)
	TileDBArray (104)
	tiledbsoma (1)
	tilingArray (183)
	timechange (177)
	timecourse (150)
	timeDate (38)
	timeOmics (121)
	TimeProjection (1)
	timereg (1)
	TimerQuant (0)
	timescape (107)
	timeSeries (13)
	TimeSeriesExperiment (20)
	timetk (1)
	timevis (1)
	TimiRGeN (36)
	Timma (0)
	TIN (108)
	TINC (0)
	tinkr (1)
	tinysnapshot (0)
	tinytable (1)
	tinytest (0)
	tinytex (353)
	tippy (0)
	TiPS (1)
	tis (0)
	TissueEnrich (245)
	TitanCNA (143)
	titanic (0)
	tkrgl (0)
	tkrplot (0)
	tkWidgets (1392)
	tkwidgets (1)
	tldrm (1)
	TLMoments (1)
	tLOH (84)
	tm (5)
	tmap (1)
	tmaptools (1)
	TMB (12)
	tmcn (1)
	TMixClust (121)
	tmle (2)
	TMSig (30)
	tmvnsim (1)
	tmvtnorm (1)
	TNBC.CMS (41)
	TNO (0)
	TNRS (1)
	TnT (76)
	TOAST (441)
	toastui (9)
	tofsims (22)
	tokenizers (3)
	tokupika (0)
	tolerance (0)
	tomoda (92)
	tomoseqr (78)
	tools (1)
	toOrdinal (1)
	TOP (77)
	ToPASeq (34)
	topconfects (183)
	topdownr (109)
	topGO (2837)
	topgo (0)
	topicmodels (1)
	topr (9)
	torch (1)
	tornado (0)
	tourr (1)
	ToxicoGx (109)
	Tplyr (2)
	TPP (155)
	TPP2D (93)
	tpSVG (61)
	tracee (1)
	tracklayer (0)

	tracktables (206)
	trackViewer (620)
	trackviewer (0)
	tradeSeq (557)
	tradeseq (0)
	traits (1)
	TrajectoryGeometry (72)
	TrajectoryUtils (1926)
	tram (0)
	TraMineR (0)
	transcriptogramer (105)
	transcriptR (117)
	transformGamPoi (111)
	transformr (0)
	transite (101)
	translations (1)
	tRanslatome (215)
	transmogR (61)
	transomics2cytoscape (103)
	transport (1)
	TransView (104)
	TraRe (12)
	traseR (117)
	Travel (5)
	traviz (75)
	tree (1)
	TreeAndLeaf (150)
	treeclimbR (64)
	treeio (21487)
	treekoR (103)
	treemap (1)
	treemapify (0)
	treesitter.r (1)
	treespace (0)
	TreeSummarizedExperiment (2062)
	TreeTools (1)
	TREG (84)
	TReNA (4)
	trena (33)
	trendeval (1)
	Trendy (101)
	TRESS (99)
	triangle (1)
	tricycle (234)
	TrIdent (11)
	triebeard (2)
	triform (48)
	trigger (136)
	trimcluster (0)
	trio (166)
	tripack (0)
	triplex (135)
	tripr (82)
	tRNA (144)
	tRNAdbImport (127)
	tRNAscanImport (107)
	TRONCO (127)
	trtf (0)
	truncdist (0)
	truncnorm (3)
	truncreg (0)
	trust (0)
	tryCatchLog (1)
	TSAR (65)
	tsbox (1)
	TSCAN (634)
	tscR (18)
	tseries (9)
	tseriesChaos (0)
	tsfeatures (1)
	tsibble (1)
	tsibbledata (0)
	tsModel (0)
	tsna (0)
	tsne (1)
	tsoutliers (2)
	TSP (14)
	tspair (55)
	TSRchitect (24)
	TSSi (44)
	tsvio (1)
	ttdo (0)
	ttgsea (88)
	TTMap (97)
	TTR (5)
	ttservice (1)
	tufte (0)
	tune (13)
	tuneR (0)
	tuneRanger (1)
	TurboNorm (131)
	turner (1)
	Turnover.cells.pSILAC.TMT (1)
	TVTB (110)
	twang (3)
	twangContinuous (0)
	tweeDEseq (180)
	tweedie (0)
	tweenr (33)
	twilight (154)
	twoddpcr (98)
	TwoSampleMR (1)
	twosamples (1)
	txcutr (83)
	TxDb.Hsapiens.UCSC.hg19.knownGene (6)
	TxDb.Hsapiens.UCSC.hg38.knownGene (1)
	TxDb.Mmusculus.UCSC.mm10.ensGene (0)
	TxDb.Mmusculus.UCSC.mm10.knownGene (6)
	TxDb.Mmusculus.UCSC.mm9.knownGene (0)
	txdbmaker (3353)
	tximeta (997)
	tximport (3427)
	tximportDat (0)
	tximportData (3)
	TxRegInfra (16)
	txtq (0)
	TypeInfo (99)
	tzdb (29)

U

V

	V.PhyloMaker2 (0)
	V8 (90)
	VAExprs (79)
	validate (1)
	valr (1)
	VAM (1)
	VanillaICE (253)
	vaplot (0)
	vapour (0)
	VarCon (82)
	variables (0)
	variancePartition (953)
	VariantAnnotation (11637)
	variantannotation (1)
	VariantExperiment (78)
	VariantFiltering (145)
	VariantTools (181)
	VariantWarehouseBMS (0)
	varImp (0)
	vars (1)
	vasp (7)
	VaSP (98)
	vaultr (1)
	vbmp (154)
	VBsparsePCA (0)
	vcd (4)
	VCFArray (102)
	vcfR (1)
	vcr (0)

	vctrs (125)
	vdbR (0)
	vdiffr (1)
	VDJdive (87)
	Vega (39)
	VegaMC (122)
	vegan (35)
	vegawidget (0)
	velociraptor (174)
	velocyto.R (1)
	veloviz (80)
	vembedr (0)
	vendormetadatahelpers (0)
	venn (10)
	VennDetail (294)
	VennDiagram (1)
	venneuler (1)
	verification (0)
	VERSO (83)
	vetiver (1)
	VGAM (15)
	VGAMextra (0)
	vhydeg (0)
	VIBER (0)
	vidger (152)
	VIM (1)
	vimp (1)
	VineCopula (0)
	vioplot (1)

	vip (1)
	viper (746)
	vipor (14)
	viridis (188)
	viridisLite (39)
	viridislite (0)
	virtualArray (14)
	visdat (1)
	ViSEAGO (144)
	VISION (1)
	VisiumIO (74)
	visiumStitched (14)
	visNetwork (3)
	visOmopResults (1)
	visR (2)
	vissE (140)
	vistime (1)
	vitae (0)
	Voyager (203)
	vpc (0)
	VplotR (97)
	vroom (74)
	vscDebugger (1)
	vsclust (84)
	vsn (5008)
	vtable (1)
	vtpnet (133)
	vulcan (105)

W

	WA43966.shareR.3043877 (1)
	waddR (80)
	waffle (1)
	waiter (10)
	wakefield (0)
	waldo (173)
	wallace (1)
	warp (14)
	wateRmelon (855)
	wavClusteR (117)
	waved (1)
	waveslim (1)
	waveTiling (46)
	wdm (0)
	wdman (2)
	weaver (132)
	webbioc (139)
	webchem (1)
	webdriver (0)
	webfakes (0)
	WebGestaltR (1)
	webmockr (0)
	webp (1)
	webshot (19)

	webshot2 (2)
	websocket (22)
	webutils (2)
	WeightIt (3)
	weights (3)
	WeightSVM (0)
	weitrix (93)
	WES.1KG.WUGSC (1)
	wesanderson (1)
	WGCNA (14)
	WGScan (0)
	WGSmapp (1)
	whereami (0)
	whisker (18)
	whitening (0)
	whoami (1)
	widgetframe (1)
	widgetInvoke (6)
	widgetTools (1391)
	widgettools (1)
	wiggleplotr (176)
	WikidataQueryServiceR (0)
	WikidataR (0)
	WikipediR (5)

	wikitaxa (0)
	wildmeta (0)
	winboxr (1)
	withr (249)
	wk (33)
	wmtsa (1)
	worcs (1)
	wordcloud (0)
	wordcloud2 (0)
	workflowr (1)
	workflows (12)
	workflowsets (12)
	WorldFlora (1)
	worrms (2)
	wpm (96)
	wppi (67)
	wrapr (1)
	Wrench (1612)
	writexl (34)
	WriteXLS (4)
	wrMisc (0)
	WRS2 (2)

X

Y

	y2hStat (3)
	yaImpute (1)
	yaml (279)
	yamss (110)
	YAPSA (128)

	yaqcaffy (51)
	yardstick (18)
	yarn (146)
	ylab.utils (0)
	ymlthis (0)

	ympes (1)
	yspec (1)
	yulab.utils (60)

Z

	zCompositions (11)
	zeallot (1)
	zellkonverter (1496)
	zelusutils (1)
	zen4R (0)
	zenith (137)

	zFPKM (157)
	zinbwave (874)
	zingeR (1)
	zip (178)
	Ziploc (1)
	zitools (29)

	zli (1)
	zlibbioc (54575)
	zoo (27)
	ZygosityPredictor (77)

Stats generated by https://github.com/Bioconductor/download_stats/