R/rankAndScoring.R
singscoringOneGS.Rd
scoring single gene set signature when direction of gene set is unknown
singscoringOneGS(rankData, upSet, subSamples = NULL, centerScore = FALSE, dispersionFun = mad)
rankData | A matrix, ranked gene expression matrix data |
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upSet | A GeneSet object, up regulated gene set |
subSamples | A character or vector of sample labels/indices that will be used to subset the rankData matrix.All samples will be scored by default. |
centerScore | A Boolean, specifying whether scores should be centred, default as FALSE |
dispersionFun | A character, dispersion function with default as 'mad' |
downSet | A GeneSet object, down regulated gene set |
A data.frame consists of scores and dispersions for all samples