scoring single gene set signature when direction of gene set is unknown

singscoringOneGS(rankData, upSet, subSamples = NULL,
  centerScore = FALSE, dispersionFun = mad)

Arguments

rankData

A matrix, ranked gene expression matrix data

upSet

A GeneSet object, up regulated gene set

subSamples

A character or vector of sample labels/indices that will be used to subset the rankData matrix.All samples will be scored by default.

centerScore

A Boolean, specifying whether scores should be centred, default as FALSE

dispersionFun

A character, dispersion function with default as 'mad'

downSet

A GeneSet object, down regulated gene set

Value

A data.frame consists of scores and dispersions for all samples